Single-chain antibody fragments: Purification methodologies

At present, single-chain variable fragments (scFv) of antibodies are considered one of the most important tools in human therapies. Wide applications of antibodies are being exploited in different medical, pharmaceutical and research areas. These molecules maintain the same binding functionality that full length antibodies but possess several advantageous features as quickness to penetrate the tissues, easy manipulation, fast elimination of their immunocomplex and the possibility of being produced in simple expression systems like bacteria and yeast. The increasing demand in antibody based methodologies is driving advances in the production and purification of genetically engineered antibodies and antibody fragments. While advances in expression systems allow the production of high titers of antibodies, there exist some limits imposed by the downstream methodologies which are not efficient enough to ensure their industrialization.The main aim of this review is to highlight the principal characteristics of single-chain variable fragments of antibodies addressing advances and perspectives on scFv purification.     

Blood Perfusion in a Murine Fibrosarcoma Tumor Model After Direct Current Electrotherapy a Study with 86Rb Extraction Technique

Electrotherapy with low-level direct current (DC) can induce antitu-mor effects in various tumor models. Applied in combination with certain anticancer drugs, it can significantly increase their effectiveness. It has been suggested that the demonstrated effects of electrotherapy arise from its modification of tumor blood flow. The effect of such treatment on blood perfusion of solid subcutaneous Sa-1 fibrosarcoma tumors in A/J mice was investigated with a ⁸⁶rubidium extraction technique. Following electrotherapy, the relative tissue perfusion of tumors was decreased by more than 50%. Three days after treatment, partial reperfusion of tumors occurred. The dynamics of the perfusion changes induced by electrotherapy are in agreement with tumor growth dynamics following this procedure. The effect of electrotherapy on the blood supply of tumors may be the major mechanism of antitumor action in our model. Electrotherapy could be useful as an adjuvant local procedure to other treatment modalities that require a hypoxic environment for their effectiveness.     

A Murine Model of Subarachnoid Hemorrhage

In this video publication a standardized mouse model of subarachnoid hemorrhage (SAH) is presented. Bleeding is induced by endovascular Circle of Willis perforation (CWp) and proven by intracranial pressure (ICP) monitoring. Thereby a homogenous blood distribution in subarachnoid spaces surrounding the arterial circulation and cerebellar fissures is achieved. Animal physiology is maintained by intubation, mechanical ventilation, and continuous on-line monitoring of various physiological and cardiovascular parameters: body temperature, systemic blood pressure, heart rate, and hemoglobin saturation. Thereby the cerebral perfusion pressure can be tightly monitored resulting in a less variable volume of extravasated blood. This allows a better standardization of endovascular filament perforation in mice and makes the whole model highly reproducible. Thus it is readily available for pharmacological and pathophysiological studies in wild type and genetically altered mice.     

一株脱卤单胞菌属有机卤呼吸细菌的分离纯化与基础特征

【目的】分离鉴定新型有机卤呼吸细菌,拓展有机氯污染物降解菌种资源。【方法】在限制性培养基中,基于特定脱卤微生物的能量代谢特点以及对抗生素的抗性特征,应用绝迹稀释法从脱氯富集培养物中分离纯化新型有机卤呼吸细菌。通过添加酵母提取物和聚合酶链反应-限制性片段长度多态性等方法鉴定菌株纯度。通过考察细胞形态、16S rRNA系统发育树以及对有机氯化物的利用能力来描述此新型菌株的基本特征。【结果】菌株GP是一株来自脱卤单胞菌属(Dehalo genimonas)的新型有机卤呼吸细菌,可耐受1.0 g/L的氨苄青霉素和0.1 g/L的万古霉素,其细胞平面形态为直径0.4–0.8μm的不规则圆形。在乙酸作碳源、氢气作电子供体的条件下,菌株GP可利用1,1-二氯乙烯和一氯乙烯作为电子受体进行有机卤呼吸,脱氯终产物为无毒害的乙烯。16SrRNA系统发育分析表明,菌株GP与Dehalo genimonas formicexedens菌株NSZ-14有高达99.5%的同源性,但两菌株对有机氯化物底物的利用范围不同。【结论】从脱氯富集培养物中分离纯化出一株新型有机卤呼吸细菌,为深入研究脱卤单胞菌这一重要脱卤微生物的遗传学信息和生理生化性质提供了新材料。     

Modification of plant bait technique for direct diagnosis for Rhizoctonia rice pathogens from Myanmar paddy field soils

A modified baiting technique was conducted for selective isolation, fungal DNA diagnosis and fungal cell lipid assay derived from Myanmar isolates of Rhizoctonia spp., causal agents of rice sheath diseases by trapping selective plant stem segments. Bait plant materials of rice, mat rush and cotton were successfully used to isolate R. solani AG1-IA, R. oryzae and R. oryzae-sativae. Moreover, the three plant materials were also effectively used to detect genomic DNA derived from all Rhizoctonia spp. obtained from Myanmar. Rice segment was the most successful materials for detection of fungal cell lipids including palmitic, stearic and linoleic acids. The results of this experiment demonstrate that bait plant materials of rice, mat rush and cotton were the best useful tools for not only direct isolation, but also fungal DNA diagnosis and cell lipid assay of Myanmar soil environmental conditions.     

Integrated control of apple pests in New Zealand

A technique is described whereby 5th‐instar larvae of the codling moth (Laspeyresia pomonella) which have finished feeding can be tagged externally with cobalt‐58 and released on apple trees, where they seek cocooning sites. Two μCi ⁵⁸Co per insect did not significantly affect larval survival in the field, or subsequent pupation, emergence, mating, and oviposition in the laboratory. Tagging was more efficient than whole‐tree scraping for the location of cocoons, and was non‐destructive of both the insects and their cocooning sites.

Relocation and observation of the tagged larvae in their cocoons permitted accurate estimation of mortality from when they left the fruit (= release) until adult emergence in the following spring. Natural mortality of larvae seeking cocooning sites was attributed mainly to insect predators, and varied significantly between trees and blocks, averaging 57% over 6 years. Avian predation by the silvereye (Zosterops lateralis) was the greatest hazard to cocooned larvae; this, too, varied significantly between blocks, and averaged 53% over the same period. Both mortalities appeared to be density‐related.     

单克隆抗体在植物研究中的应用

单克隆抗体是现代生命科学研究的重要工具。随着分子生物学的发展,单克隆抗体在植物研究中发挥着越来越重要的作用。本文综述了单克隆抗体在蛋白表达、蛋白定位、蛋白相互作用、植物成分的定性与定量、植物成分纯化、植物病害检测、标签抗体等方面研究中的应用。     

The design of a peptide sequence to inhibit HIV replication: a search algorithm combining Monte Carlo and self-consistent mean field techniques

We developed a search algorithm combining Monte Carlo (MC) and self-consistent mean field techniques to evolve a peptide sequence that has good binding capability to the anticodon stem and loop (ASL) of human lysine tRNA species, tRNA^Lys3, with the ultimate purpose of breaking the replication cycle of human immunodeficiency virus-1. The starting point is the 15-amino-acid sequence, RVTHHAFLGAHRTVG, found experimentally by Agris and co-workers to bind selectively to hypermodified tRNA^Lys3. The peptide backbone conformation is determined via atomistic simulation of the peptide-ASL^Lys3 complex and then held fixed throughout the search. The proportion of amino acids of various types (hydrophobic, polar, charged, etc.) is varied to mimic different peptide hydration properties. Three different sets of hydration properties were examined in the search algorithm to see how this affects evolution to the best-binding peptide sequences. Certain amino acids are commonly found at fixed sites for all three hydration states, some necessary for binding affinity and some necessary for binding specificity. Analysis of the binding structure and the various contributions to the binding energy shows that: 1) two hydrophilic residues (asparagine at site 11 and the cysteine at site 12) “recognize” the ASL^Lys3 due to the VDW energy, and thereby contribute to its binding specificity and 2) the positively charged arginines at sites 4 and 13 preferentially attract the negatively charged sugar rings and the phosphate linkages, and thereby contribute to the binding affinity.     

内蒙古天然草原不同放牧压力下亚洲小车蝗的食性及营养生态位（英文）

植物表皮蜡质中的饱和链烷作为内源指示剂广泛用于评价放牧家畜的食性和食量, 但用于天然草原蝗虫食性的评价研究较少。为了探讨天然草原蝗虫的食性及其生态位变化, 本研究以内蒙古天然草原为研究对象, 于2003年7-8月沿降水梯度选择3种典型植物群落（小针茅Stipa klemenzii、 羊草Leymus chinensis和大针茅Stipa grandis群落）, 在每个植物群落不同放牧压力下小区随机做20个植被样方, 样方内植物齐地面刈割, 测定其地上生物量和物种多样性, 取主要植物种测定其链烷模式, 同时采集放牧小区优势蝗虫种亚洲小车蝗Oedaleus asiaticus的粪便, 测定其链烷模式, 运用链烷技术评价蝗虫的食性及其营养生态位。结果表明： 不同植物群落中优势牧草种类及其比例不同, 其链烷模式存在种间差异, 链烷技术可以评价亚洲小车蝗的食性。亚洲小车蝗的食性在不同植物群落及不同放牧压力下存在显著的差异, 在羊草和大针茅群落中, 亚洲小车蝗是禾草采食者, 主要采食羊草和糙隐子草Cleistogenes squarrosa, 且与绵羊的营养生态位重叠指数较低, 分别为0.0619和0.0172; 在小针茅群落中亚洲小车蝗是杂类草采食者, 主要采食无芒隐子草Cleistogenes songorica、 猪毛菜Salsola collina和小针茅, 且与绵羊的营养生态位重叠指数较高, 达到0.1815。因此, 放牧不仅改变了群落的植物种类组成, 而且直接影响了亚洲小车蝗的食物组成, 二者对食物资源利用存在一定程度的竞争。     

Two Simple Methods for the Collection of Individual Life Stages of Reniform Nematode,Rotylenchulus reniformis

The sedentary semi-endoparasitic nematode Rotylenchulus reniformis, the reniform nematode, is a serious pest of cotton and soybean in the United States. In recent years, interest in the molecular biology of the interaction between R. reniformis and its plant hosts has increased; however, the unusual life cycle of R. reniformis presents a unique set of challenges to researchers who wish to study the developmental expression of a particular nematode gene or evaluate life stage–specific effects of a specific treatment such as RNA-interference or a potential nematicide. In this report, we describe a simple method to collect R. reniformis juvenile and vermiform adult life stages under in vitro conditions and a second method to collect viable parasitic sedentary females from host plant roots. Rotylenchulus reniformis eggs were hatched over a Baermann funnel and the resultant second-stage juveniles incubated in petri plates containing sterile water at 30°C. Nematode development was monitored through the appearance of fourth-stage juveniles and specific time-points at which each developmental stage predominated were determined. Viable parasitic sedentary females were collected from infected roots using a second method that combined blending, sieving, and sucrose flotation. Rotylenchulus reniformis life stages collected with these methods can be used for nucleic acid or protein extraction or other experimental purposes that rely on life stage–specific data.